STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORW56396.1DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)    
Predicted Functional Partners:
ORW58914.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.691
arcA
Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.677
ORW59656.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.636
ORW56632.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.636
AWC20_04285
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.636
ORW58837.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.636
ORW56357.1
Fatty acyl-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.636
ORW53145.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.636
ORW53229.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.636
ORW58432.1
DNA-3-methyladenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.552
Your Current Organism:
Mycobacterium parmense
NCBI taxonomy Id: 185642
Other names: CCUG 50998, CIP 107385, DSM 44553, JCM 14742, M. parmense, Mycobacterium parmense Fanti et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.