STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiB-6Transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (138 aa)    
Predicted Functional Partners:
ORW48596.1
Type VII secretion-associated serine protease mycosin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
   
    0.749
ORW48508.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.747
ORW54558.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.743
ORW54560.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.743
ORW48510.1
Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.735
ORW54556.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.722
ORW54562.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.644
ORW54563.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
ORW54561.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.604
ORW54559.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.579
Your Current Organism:
Mycobacterium parmense
NCBI taxonomy Id: 185642
Other names: CCUG 50998, CIP 107385, DSM 44553, JCM 14742, M. parmense, Mycobacterium parmense Fanti et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.