STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THL1_2038General secretion pathway protein GspI. (129 aa)    
Predicted Functional Partners:
THL1_2039
General secretion pathway protein GspJ.
 
 
 0.989
THL1_2040
General secretion pathway protein GspK.
 
 
 0.986
THL1_2037
General secretion pathway protein GspH.
 
  
 0.964
THL1_2041
Hypothetical protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.956
THL1_5045
General secretion pathway protein GspJ.
 
 
 0.953
THL1_5046
General secretion pathway protein GspK.
 
 
 0.944
THL1_2036
Type II secretion system protein XcpT.
 
  
 0.934
THL1_2035
General secretion pathway protein GspF.
 
  
 0.928
THL1_2034
General secretion pathway protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.913
THL1_5044
General secretion pathway protein GspI.
  
  
 
0.913
Your Current Organism:
Pseudomonas sp. TCUHL1
NCBI taxonomy Id: 1856685
Other names: P. sp. TCU-HL1, Pseudomonas sp. TCU-HL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.