STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG18884.12-methylcitrate dehydratase. (499 aa)    
Predicted Functional Partners:
SFG18921.1
2-methylcitrate synthase; Belongs to the citrate synthase family.
 
 
 0.993
SFG18900.1
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.
 
  
 0.990
SFG80912.1
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.885
SFG18864.1
Hypothetical protein.
 
  
 0.820
SFG70976.1
Hypothetical protein.
 
  
 0.652
SFG18940.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
    0.591
SFG57141.1
Aconitase.
  
 
 0.537
SFG19448.1
TIGR03089 family protein.
  
 
 0.494
SFG73769.1
acetyl-CoA synthetase.
  
 
 0.494
SFG77662.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
  0.459
Your Current Organism:
Corynebacterium spheniscorum
NCBI taxonomy Id: 185761
Other names: C. spheniscorum, CCUG 45512, CECT 5986, Corynebacterium spheniscorum Goyache et al. 2003, DSM 44757, JCM 12271, strain PG 39
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