Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFG20446.1 | SFG27663.1 | SAMN05660282_00268 | SAMN05660282_00451 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Ribonuclease E. | 0.762 |
SFG20446.1 | infB | SAMN05660282_00268 | SAMN05660282_00648 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.504 |
SFG20446.1 | pnp | SAMN05660282_00268 | SAMN05660282_00632 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.885 |
SFG20446.1 | rpsO | SAMN05660282_00268 | SAMN05660282_00633 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.690 |
SFG27663.1 | SFG20446.1 | SAMN05660282_00451 | SAMN05660282_00268 | Ribonuclease E. | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.762 |
SFG27663.1 | SFG55399.1 | SAMN05660282_00451 | SAMN05660282_01212 | Ribonuclease E. | Superfamily II DNA and RNA helicase. | 0.734 |
SFG27663.1 | SFG75470.1 | SAMN05660282_00451 | SAMN05660282_01843 | Ribonuclease E. | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.451 |
SFG27663.1 | pnp | SAMN05660282_00451 | SAMN05660282_00632 | Ribonuclease E. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.992 |
SFG27663.1 | rnj | SAMN05660282_00451 | SAMN05660282_00623 | Ribonuclease E. | Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.769 |
SFG55399.1 | SFG27663.1 | SAMN05660282_01212 | SAMN05660282_00451 | Superfamily II DNA and RNA helicase. | Ribonuclease E. | 0.734 |
SFG55399.1 | infB | SAMN05660282_01212 | SAMN05660282_00648 | Superfamily II DNA and RNA helicase. | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.504 |
SFG55399.1 | pnp | SAMN05660282_01212 | SAMN05660282_00632 | Superfamily II DNA and RNA helicase. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.877 |
SFG55399.1 | rpsO | SAMN05660282_01212 | SAMN05660282_00633 | Superfamily II DNA and RNA helicase. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.694 |
SFG75470.1 | SFG27663.1 | SAMN05660282_01843 | SAMN05660282_00451 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Ribonuclease E. | 0.451 |
SFG75470.1 | pnp | SAMN05660282_01843 | SAMN05660282_00632 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.876 |
infB | SFG20446.1 | SAMN05660282_00648 | SAMN05660282_00268 | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.504 |
infB | SFG55399.1 | SAMN05660282_00648 | SAMN05660282_01212 | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Superfamily II DNA and RNA helicase. | 0.504 |
infB | nusA | SAMN05660282_00648 | SAMN05660282_00650 | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.953 |
infB | pnp | SAMN05660282_00648 | SAMN05660282_00632 | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.900 |
infB | rpoB | SAMN05660282_00648 | SAMN05660282_00052 | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.978 |
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