STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M5G8K0_DACPDClavaminate synthase-like protein. (528 aa)    
Predicted Functional Partners:
M5G569_DACPD
Bromodomain-containing protein.
    
 
 0.817
M5GBS1_DACPD
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.758
M5G489_DACPD
Histone H3; Belongs to the histone H3 family.
    
  0.660
M5G6C1_DACPD
Histone H3; Belongs to the histone H3 family.
    
  0.660
M5G8P5_DACPD
Histone H3; Belongs to the histone H3 family.
    
  0.660
M5GEW7_DACPD
Histone H3 variant.
    
  0.660
M5GGP1_DACPD
Histone H3.
    
  0.660
M5G086_DACPD
DUF2236 domain-containing protein.
    
  0.653
M5FZT5_DACPD
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.510
M5G166_DACPD
Uncharacterized protein; Belongs to the DOCK family.
    
 
 0.448
Your Current Organism:
Dacryopinax primogenitus
NCBI taxonomy Id: 1858805
Other names: D. primogenitus, DJM 731, DJM-731 SS1, Dacryopinax primogenitus D. J. McLaughlin & E. G. McLaughlin, 2016, Dacryopinax sp. DJM-731 SS1, Dacryopinax sp. MIN 862738, MIN 929365
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.