STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M5G8P5_DACPDHistone H3; Belongs to the histone H3 family. (140 aa)    
Predicted Functional Partners:
M5GBS1_DACPD
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
 
 
 0.990
M5G1W6_DACPD
Histone H2B; Belongs to the histone H2B family.
 
 
 0.977
M5G5G6_DACPD
Histone H2B; Belongs to the histone H2B family.
 
 
 0.972
M5GA69_DACPD
Clavaminate synthase-like protein.
    
 0.967
M5G2R8_DACPD
Histone H2A; Belongs to the histone H2A family.
 
 
 0.943
M5FT23_DACPD
JmjC-domain-containing protein.
    
 0.941
M5FTJ0_DACPD
SNF5-domain-containing protein.
    
 0.926
M5FQV0_DACPD
SET domain-containing protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.
 
  
 0.923
M5FUS4_DACPD
SET domain-containing protein.
    
 0.923
M5GA59_DACPD
Chromatin assembly factor 1 subunit C.
   
 0.921
Your Current Organism:
Dacryopinax primogenitus
NCBI taxonomy Id: 1858805
Other names: D. primogenitus, DJM 731, DJM-731 SS1, Dacryopinax primogenitus D. J. McLaughlin & E. G. McLaughlin, 2016, Dacryopinax sp. DJM-731 SS1, Dacryopinax sp. MIN 862738, MIN 929365
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