M5GAD0_DACPD protein (Dacryopinax primogenitus)

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second shell of interactors

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Coexpression

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Score

M5GAD0_DACPD

GroES-like protein. (349 aa)

Predicted Functional Partners:

M5GDP3_DACPD

0.800

M5FQG8_DACPD

0.575

M5FQY3_DACPD

0.575

pks1

0.575

M5G031_DACPD

0.562

M5FW41_DACPD

0.560

M5G605_DACPD

0.560

M5FTL3_DACPD

0.532

M5G4H0_DACPD

0.523

M5FW21_DACPD

0.485

Your Current Organism:

Dacryopinax primogenitus

NCBI taxonomy Id: 1858805
Other names: D. primogenitus, DJM 731, DJM-731 SS1, Dacryopinax primogenitus D. J. McLaughlin & E. G. McLaughlin, 2016, Dacryopinax sp. DJM-731 SS1, Dacryopinax sp. MIN 862738, MIN 929365

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M5FQG8_DACPD	M5FTL3_DACPD	M5FQG8	M5FTL3	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase.	NADP-binding protein.	0.575
M5FQG8_DACPD	M5FW21_DACPD	M5FQG8	M5FW21	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.788
M5FQG8_DACPD	M5G031_DACPD	M5FQG8	M5G031	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase.	NADP-binding protein.	0.575
M5FQG8_DACPD	M5G4H0_DACPD	M5FQG8	M5G4H0	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase.	GroES-like protein.	0.575
M5FQG8_DACPD	M5GAD0_DACPD	M5FQG8	M5GAD0	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase.	GroES-like protein.	0.575
M5FQY3_DACPD	M5FTL3_DACPD	M5FQY3	M5FTL3	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	NADP-binding protein.	0.575
M5FQY3_DACPD	M5FW21_DACPD	M5FQY3	M5FW21	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.788
M5FQY3_DACPD	M5G031_DACPD	M5FQY3	M5G031	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	NADP-binding protein.	0.575
M5FQY3_DACPD	M5G4H0_DACPD	M5FQY3	M5G4H0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	GroES-like protein.	0.575
M5FQY3_DACPD	M5GAD0_DACPD	M5FQY3	M5GAD0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	GroES-like protein.	0.575
M5FTL3_DACPD	M5FQG8_DACPD	M5FTL3	M5FQG8	NADP-binding protein.	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase.	0.575
M5FTL3_DACPD	M5FQY3_DACPD	M5FTL3	M5FQY3	NADP-binding protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.575
M5FTL3_DACPD	M5FW21_DACPD	M5FTL3	M5FW21	NADP-binding protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.485
M5FTL3_DACPD	M5GAD0_DACPD	M5FTL3	M5GAD0	NADP-binding protein.	GroES-like protein.	0.532
M5FTL3_DACPD	M5GDP3_DACPD	M5FTL3	M5GDP3	NADP-binding protein.	Molybdopterin binding oxidoreductase.	0.800
M5FTL3_DACPD	pks1	M5FTL3	M5G836	NADP-binding protein.	Polyketide synthase.	0.575
M5FW21_DACPD	M5FQG8_DACPD	M5FW21	M5FQG8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase.	0.788
M5FW21_DACPD	M5FQY3_DACPD	M5FW21	M5FQY3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.788
M5FW21_DACPD	M5FTL3_DACPD	M5FW21	M5FTL3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-binding protein.	0.485
M5FW21_DACPD	M5G031_DACPD	M5FW21	M5G031	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-binding protein.	0.485

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Network Stats

number of nodes:

11

number of edges:

24

average node degree:

4.36

avg. local clustering coefficient:

0.858

expected number of edges:

10

PPI enrichment p-value:

0.000168

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 107

1.48

2.8

1.37e-11

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

10 of 54

1.78

4.42

1.30e-14

GO:0019843

rRNA binding

9 of 45

1.82

4.3

2.70e-13

GO:1901363

Heterocyclic compound binding

10 of 1021

0.51

0.39

0.0038

GO:0097159

Organic cyclic compound binding

10 of 1021

0.51

0.39

0.0038

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

10 of 59

1.74

4.32

5.48e-15

GO:0015935

Small ribosomal subunit

4 of 8

2.21

3.1

5.74e-07

GO:0005622

Intracellular anatomical structure

11 of 1443

0.4

0.34

0.00075

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:37185344

(2023) Independent origins and evolution of the secondary replicons of the class Gammaproteobacteria.

4 of 29

1.65

1.34

0.0012

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:125

Ribosome

10 of 32

2.01

5.87

1.30e-16

CL:166

Small ribosomal subunit, and Ribosome

6 of 11

2.25

4.74

8.47e-11

CL:169

Small ribosomal subunit, and rRNA binding

3 of 5

2.29

2.25

4.82e-05

CL:126

Ribosome

4 of 20

1.82

2.12

2.09e-05

CL:127

Ribosome

3 of 12

1.91

1.68

0.00037

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

pagc03010

Ribosome

10 of 53

1.79

4.62

1.54e-15

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0015935

Small ribosomal subunit

10 of 20

2.21

7.39

9.16e-19

GOCC:0022627

Cytosolic small ribosomal subunit

9 of 19

2.19

6.58

1.88e-16

GOCC:0005829

Cytosol

10 of 889

0.57

0.48

0.00018

GOCC:0005622

Intracellular

11 of 1433

0.4

0.34

0.00090

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

7 of 51

1.65

2.78

1.40e-08

KW-0687

Ribonucleoprotein

7 of 51

1.65

2.78

1.40e-08

KW-0699

rRNA-binding

5 of 30

1.74

2.36

2.19e-06

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