STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M5GD54_DACPDNLI interacting factor. (184 aa)    
Predicted Functional Partners:
M5G8M7_DACPD
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.931
M5GCR6_DACPD
LNS2-domain-containing protein.
    
 0.904
M5FPT8_DACPD
Tim17-domain-containing protein.
    
 0.883
M5G2C8_DACPD
Tim17-domain-containing protein.
   
 0.869
M5GCJ2_DACPD
Uncharacterized protein.
    
 0.830
M5G5D5_DACPD
Uncharacterized protein.
    
 0.817
M5G0E6_DACPD
RNA polymerase II.
    
 0.801
M5GE54_DACPD
Uncharacterized protein.
    
 0.801
M5G100_DACPD
RBP11-like subunit of RNA polymerase.
    
 0.772
M5FVM7_DACPD
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.764
Your Current Organism:
Dacryopinax primogenitus
NCBI taxonomy Id: 1858805
Other names: D. primogenitus, DJM 731, DJM-731 SS1, Dacryopinax primogenitus D. J. McLaughlin & E. G. McLaughlin, 2016, Dacryopinax sp. DJM-731 SS1, Dacryopinax sp. MIN 862738, MIN 929365
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