STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHU87296.1Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)    
Predicted Functional Partners:
OHU87295.1
HxlR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.606
OHU90485.1
Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.475
OHU87297.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.425
OHU91923.1
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.423
OHU90124.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.415
OHU91574.1
NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.411
OHU92167.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.404
Your Current Organism:
Pseudoalteromonas amylolytica
NCBI taxonomy Id: 1859457
Other names: CGMCC 1.15681, KCTC 52406, MCCC 1K02162, P. amylolytica, Pseudoalteromonas amylolytica Wu et al. 2017, Pseudoalteromonas sp. JW1, strain JW1
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