STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFI49312.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)    
Predicted Functional Partners:
OFI49062.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.900
OFI49082.1
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.889
OFI48875.1
Homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.855
OFI48583.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.730
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.704
OFI48439.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.677
OFI49401.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.675
OFI49920.1
Threonine-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.668
OFI50337.1
Glutathione-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.623
OFI49310.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.618
Your Current Organism:
Floricoccus tropicus
NCBI taxonomy Id: 1859473
Other names: Anthococcus sp. DF1, F. tropicus, Floricoccus tropicus Chuah et al. 2017, JCM 31733, LMG 29833, LMG:29833, Lactobacillales bacterium DF1, Lactobacillales bacterium HibF2, Lactobacillales bacterium HibF5, Streptococcus sp. DF1, Streptococcus sp. HibF2, Streptococcus sp. HibF5, strain DF1
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