STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIQ46857.1Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (832 aa)    
Predicted Functional Partners:
OIQ46453.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.688
OIQ48067.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.596
OIQ45139.1
S9 family peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
OIQ48130.1
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.555
OIQ46430.1
Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  0.521
OIQ47854.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.520
OIQ48685.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  0.508
OIQ46847.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.432
OIQ46452.1
Metallophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.430
OIQ48555.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.426
Your Current Organism:
Gammaproteobacteria bacterium MedPE
NCBI taxonomy Id: 1860093
Other names: G. bacterium MedPE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.