OEC93293.1 protein (Rhizobium sp. YK2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OEC93293.1

DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)

Predicted Functional Partners:

OEC93294.1

0.802

OEC93296.1

0.721

OEC93295.1

0.718

OEC94230.1

0.673

OEC93298.1

0.598

OEC93292.1

0.592

OEC96042.1

0.521

OEC93299.1

0.432

OEC93297.1

0.419

Your Current Organism:

Rhizobium sp. YK2

NCBI taxonomy Id: 1860096
Other names: R. sp. YK2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OEC93292.1	OEC93293.1	A9Z06_09985	A9Z06_09990	Ribose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family.	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
OEC93293.1	OEC93292.1	A9Z06_09990	A9Z06_09985	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family.	0.592
OEC93293.1	OEC93294.1	A9Z06_09990	A9Z06_09995	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
OEC93293.1	OEC93295.1	A9Z06_09990	A9Z06_10000	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
OEC93293.1	OEC93296.1	A9Z06_09990	A9Z06_10005	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
OEC93293.1	OEC93297.1	A9Z06_09990	A9Z06_10010	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.419
OEC93293.1	OEC93298.1	A9Z06_09990	A9Z06_10015	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	0.598
OEC93293.1	OEC93299.1	A9Z06_09990	A9Z06_10020	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
OEC93293.1	OEC94230.1	A9Z06_09990	A9Z06_08230	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
OEC93293.1	OEC96042.1	A9Z06_09990	A9Z06_00810	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malonate decarboxylase acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
OEC93294.1	OEC93293.1	A9Z06_09995	A9Z06_09990	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
OEC93294.1	OEC93295.1	A9Z06_09995	A9Z06_10000	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
OEC93294.1	OEC93296.1	A9Z06_09995	A9Z06_10005	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
OEC93294.1	OEC93297.1	A9Z06_09995	A9Z06_10010	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.893
OEC93294.1	OEC93298.1	A9Z06_09995	A9Z06_10015	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	0.825
OEC93294.1	OEC93299.1	A9Z06_09995	A9Z06_10020	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
OEC93295.1	OEC93293.1	A9Z06_10000	A9Z06_09990	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
OEC93295.1	OEC93294.1	A9Z06_10000	A9Z06_09995	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
OEC93295.1	OEC93296.1	A9Z06_10000	A9Z06_10005	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
OEC93295.1	OEC93297.1	A9Z06_10000	A9Z06_10010	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.975