STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OEC99699.1Conjugal transfer protein TraJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)    
Predicted Functional Partners:
OEC99862.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.991
OEC99697.1
Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.986
OEC99701.1
Type IV secretion system protein VirB10; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.983
OEC99700.1
P-type conjugative transfer protein VirB9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
OEC93606.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.979
OEC93605.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.977
OEC99694.1
Type IV secretion system protein VirB3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.970
OEC99702.1
P-type DNA transfer ATPase VirB11; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.966
OEC93631.1
Type IV secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.949
OEC99693.1
Type IV secretory pathway AvhB2 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.932
Your Current Organism:
Rhizobium sp. YK2
NCBI taxonomy Id: 1860096
Other names: R. sp. YK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.