STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA39162.1Hypothetical protein. (260 aa)    
Predicted Functional Partners:
SFA39155.1
ABC-2 type transport system ATP-binding protein.
 
    0.931
SFA39159.1
GntR family transcriptional regulator.
 
    0.905
SFA39143.1
ABC-2 type transport system permease protein.
 
    0.843
SFA39148.1
ABC-2 type transport system ATP-binding protein.
 
    0.822
SFA53924.1
Hypothetical protein.
  
     0.769
SFA47007.1
Piwi domain-containing protein.
  
     0.764
SFA41782.1
Flagellar hook-length control protein FliK.
  
     0.758
SFA53314.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.752
SFA46222.1
Hypothetical protein.
  
     0.750
SFA46972.1
Sugar phosphate isomerase/epimerase.
  
     0.747
Your Current Organism:
Parageobacillus thermantarcticus
NCBI taxonomy Id: 186116
Other names: BGSC 20A1, Bacillus thermantarcticus, Bacillus thermantarcticus corrig. Nicolaus et al. 2002, Bacillus thermoantarcticus, DSM 9572, Geobacillus sp. R-35644, Geobacillus thermantarcticus, Geobacillus thermantarcticus (Nicolaus et al. 2002) Coorevits et al. 2012, LMG 23032, LMG:23032, P. thermantarcticus, strain M1, strain R-35644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.