STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA40916.1Two-component system, response regulator YcbB. (303 aa)    
Predicted Functional Partners:
SFA40912.1
Two-component system, sensor histidine kinase YcbA.
 
 
  0.991
SFA41724.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.912
SFA41761.1
Flagellar motor switch protein FliN/FliY.
  
 0.901
SFA41765.1
Flagellar motor switch protein FliM.
  
 0.884
SFA48421.1
Two-component system, chemotaxis family, response regulator CheV.
 
 0.882
SFA49714.1
Ribose transport system substrate-binding protein.
 
 
 0.845
SFA41427.1
Methyl-accepting chemotaxis protein.
 
  
  0.786
SFA39501.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.746
SFA43819.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.708
SFA39877.1
Methyl-accepting chemotaxis protein.
 
  
  0.667
Your Current Organism:
Parageobacillus thermantarcticus
NCBI taxonomy Id: 186116
Other names: BGSC 20A1, Bacillus thermantarcticus, Bacillus thermantarcticus corrig. Nicolaus et al. 2002, Bacillus thermoantarcticus, DSM 9572, Geobacillus sp. R-35644, Geobacillus thermantarcticus, Geobacillus thermantarcticus (Nicolaus et al. 2002) Coorevits et al. 2012, LMG 23032, LMG:23032, P. thermantarcticus, strain M1, strain R-35644
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