STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA41949.1Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. (120 aa)    
Predicted Functional Partners:
SFA41945.1
Hypothetical protein.
 
  
 0.985
SFA41940.1
Hypothetical protein.
       0.732
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.650
SFA44444.1
EDD domain protein, DegV family.
 
    0.623
SFA41898.1
Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
     0.612
SFA38537.1
Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family.
  
    0.562
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.555
SFA43255.1
EDD domain protein, DegV family.
 
    0.544
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
       0.528
SFA42645.1
Hypothetical protein.
  
     0.527
Your Current Organism:
Parageobacillus thermantarcticus
NCBI taxonomy Id: 186116
Other names: BGSC 20A1, Bacillus thermantarcticus, Bacillus thermantarcticus corrig. Nicolaus et al. 2002, Bacillus thermoantarcticus, DSM 9572, Geobacillus sp. R-35644, Geobacillus thermantarcticus, Geobacillus thermantarcticus (Nicolaus et al. 2002) Coorevits et al. 2012, LMG 23032, LMG:23032, P. thermantarcticus, strain M1, strain R-35644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.