STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA42376.1Hypothetical protein. (172 aa)    
Predicted Functional Partners:
SFA42380.1
Hypothetical protein.
 
   0.916
SFA39371.1
Hypothetical protein.
  
     0.708
SFA38758.1
Stage 0 sporulation protein B (sporulation initiation phosphotransferase).
  
     0.690
SFA44935.1
Conserved membrane protein YqhR.
  
     0.674
SFA43089.1
Protein of unknown function; Belongs to the UPF0736 family.
  
     0.659
SFA42939.1
Stage VI sporulation protein F.
  
     0.652
SFA38978.1
Hypothetical protein.
  
     0.650
SFA49982.1
YwpF-like protein.
  
     0.608
SFA46580.1
Putative coat protein.
  
     0.599
SFA52160.1
Uncharacterized protein YlaI.
  
     0.585
Your Current Organism:
Parageobacillus thermantarcticus
NCBI taxonomy Id: 186116
Other names: BGSC 20A1, Bacillus thermantarcticus, Bacillus thermantarcticus corrig. Nicolaus et al. 2002, Bacillus thermoantarcticus, DSM 9572, Geobacillus sp. R-35644, Geobacillus thermantarcticus, Geobacillus thermantarcticus (Nicolaus et al. 2002) Coorevits et al. 2012, LMG 23032, LMG:23032, P. thermantarcticus, strain M1, strain R-35644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.