Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFA38978.1 | SFA45020.1 | SAMN05192569_1001221 | SAMN05192569_100894 | Hypothetical protein. | Competence protein ComGA. | 0.595 |
SFA38978.1 | SFA50429.1 | SAMN05192569_1001221 | SAMN05192569_102545 | Hypothetical protein. | Acetyltransferase (GNAT) family protein. | 0.512 |
SFA42260.1 | SFA50429.1 | SAMN05192569_100412 | SAMN05192569_102545 | Translation factor SUA5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | Acetyltransferase (GNAT) family protein. | 0.411 |
SFA42260.1 | SFA53421.1 | SAMN05192569_100412 | SAMN05192569_10436 | Translation factor SUA5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaB. | 0.775 |
SFA42260.1 | tsaD | SAMN05192569_100412 | SAMN05192569_10438 | Translation factor SUA5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.823 |
SFA45020.1 | SFA38978.1 | SAMN05192569_100894 | SAMN05192569_1001221 | Competence protein ComGA. | Hypothetical protein. | 0.595 |
SFA45020.1 | SFA50429.1 | SAMN05192569_100894 | SAMN05192569_102545 | Competence protein ComGA. | Acetyltransferase (GNAT) family protein. | 0.587 |
SFA48195.1 | SFA50429.1 | SAMN05192569_101670 | SAMN05192569_102545 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Acetyltransferase (GNAT) family protein. | 0.427 |
SFA48195.1 | SFA56670.1 | SAMN05192569_101670 | SAMN05192569_10773 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.776 |
SFA48195.1 | guaA | SAMN05192569_101670 | SAMN05192569_104324 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.502 |
SFA50427.1 | SFA50429.1 | SAMN05192569_102544 | SAMN05192569_102545 | Protein N-acetyltransferase, RimJ/RimL family. | Acetyltransferase (GNAT) family protein. | 0.492 |
SFA50429.1 | SFA38978.1 | SAMN05192569_102545 | SAMN05192569_1001221 | Acetyltransferase (GNAT) family protein. | Hypothetical protein. | 0.512 |
SFA50429.1 | SFA42260.1 | SAMN05192569_102545 | SAMN05192569_100412 | Acetyltransferase (GNAT) family protein. | Translation factor SUA5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | 0.411 |
SFA50429.1 | SFA45020.1 | SAMN05192569_102545 | SAMN05192569_100894 | Acetyltransferase (GNAT) family protein. | Competence protein ComGA. | 0.587 |
SFA50429.1 | SFA48195.1 | SAMN05192569_102545 | SAMN05192569_101670 | Acetyltransferase (GNAT) family protein. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.427 |
SFA50429.1 | SFA50427.1 | SAMN05192569_102545 | SAMN05192569_102544 | Acetyltransferase (GNAT) family protein. | Protein N-acetyltransferase, RimJ/RimL family. | 0.492 |
SFA50429.1 | SFA53421.1 | SAMN05192569_102545 | SAMN05192569_10436 | Acetyltransferase (GNAT) family protein. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaB. | 0.550 |
SFA50429.1 | SFA56670.1 | SAMN05192569_102545 | SAMN05192569_10773 | Acetyltransferase (GNAT) family protein. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.427 |
SFA50429.1 | aroK | SAMN05192569_102545 | SAMN05192569_102442 | Acetyltransferase (GNAT) family protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.470 |
SFA50429.1 | guaA | SAMN05192569_102545 | SAMN05192569_104324 | Acetyltransferase (GNAT) family protein. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.462 |
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