STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA50943.1Phage gp6-like head-tail connector protein. (108 aa)    
Predicted Functional Partners:
SFA50926.1
Hypothetical protein.
       0.800
SFA50930.1
Hypothetical protein.
       0.800
SFA50937.1
Phage head-tail adaptor, putative, SPP1 family.
       0.800
SFA50934.1
D5 N terminal like.
       0.797
SFA50947.1
Hypothetical protein.
       0.768
SFA50951.1
Phage major capsid protein, HK97 family.
       0.755
SFA50956.1
Phage portal protein, HK97 family.
       0.651
SFA50961.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
       0.633
SFA50965.1
Hypothetical protein.
       0.628
SFA50953.1
ATP-dependent protease ClpP, protease subunit; Belongs to the peptidase S14 family.
       0.613
Your Current Organism:
Parageobacillus thermantarcticus
NCBI taxonomy Id: 186116
Other names: BGSC 20A1, Bacillus thermantarcticus, Bacillus thermantarcticus corrig. Nicolaus et al. 2002, Bacillus thermoantarcticus, DSM 9572, Geobacillus sp. R-35644, Geobacillus thermantarcticus, Geobacillus thermantarcticus (Nicolaus et al. 2002) Coorevits et al. 2012, LMG 23032, LMG:23032, P. thermantarcticus, strain M1, strain R-35644
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