STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA51715.1Uncharacterized protein YutD. (91 aa)    
Predicted Functional Partners:
SFA46566.1
Uncharacterized protein YlbG, UPF0298 family.
  
   
 0.753
rpoE
DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.633
SFA39231.1
Primosomal protein DnaI.
  
     0.631
SFA45250.1
ABC-2 type transport system permease protein.
  
     0.631
SFA44437.1
Competence protein ComFA.
  
     0.629
SFA51712.1
Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ).
       0.594
SFA38421.1
Hypothetical protein.
  
     0.585
SFA51724.1
Uncharacterized conserved protein YutE, UPF0331/DUF86 family.
 
  
 0.576
SFA46570.1
Cell fate regulator YlbF, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development); Belongs to the UPF0342 family.
  
     0.559
SFA46638.1
Uncharacterized protein YlaN, UPF0358 family; Belongs to the UPF0358 family.
  
     0.557
Your Current Organism:
Parageobacillus thermantarcticus
NCBI taxonomy Id: 186116
Other names: BGSC 20A1, Bacillus thermantarcticus, Bacillus thermantarcticus corrig. Nicolaus et al. 2002, Bacillus thermoantarcticus, DSM 9572, Geobacillus sp. R-35644, Geobacillus thermantarcticus, Geobacillus thermantarcticus (Nicolaus et al. 2002) Coorevits et al. 2012, LMG 23032, LMG:23032, P. thermantarcticus, strain M1, strain R-35644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.