STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLU43876.1Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)    
Predicted Functional Partners:
OLU47559.1
Copper-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.546
eno
Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
       0.535
OLU45977.1
Phosphocarrier protein HPr; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.516
OLU44344.1
Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
0.476
OLU46155.1
Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.465
OLU46242.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.446
OLU43874.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.420
OLU43896.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.415
Your Current Organism:
Dubosiella newyorkensis
NCBI taxonomy Id: 1862672
Other names: ATCC TSD-64, D. newyorkensis, DSM 103457, Dubosiella newyorkensis Cox et al. 2017, Erysipelotrichaceae bacterium NYU-BL-A4, strain NYU-BL-A4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.