STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TEF_16055Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (1485 aa)    
Predicted Functional Partners:
TEF_16050
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.953
TEF_16045
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.950
TEF_03140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.949
TEF_03120
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.937
TEF_03155
Restriction endonuclease subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.930
TEF_16065
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.873
TEF_16060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.867
TEF_22030
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.811
TEF_16020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.582
TEF_22020
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.481
Your Current Organism:
Rhizobiales bacterium NRL2
NCBI taxonomy Id: 1862950
Other names: R. bacterium NRL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.