Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHD79155.1Activity regulator of membrane protease YbbK; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)    
Predicted Functional Partners:
KHD79156.1
Stomatin/prohibitin-family membrane protease subunit YbbK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.975
KHD77199.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.910
cobS
Cobalamin biosynthesis protein CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.854
KHD76460.1
Band 7 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.832
KHD74065.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.830
KHD77788.1
Band 7 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.794
KHD73391.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.621
KHD79154.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.609
KHD75173.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.574
KHD74202.1
Band 7 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.574
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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