Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
KHD79042.1Erfk/ybis/ycfs/ynhg family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)    
Predicted Functional Partners:
KHD75425.1
Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
KHD72796.1
Peptidase S1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.707
KHD76526.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
KHD72491.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.542
KHD78833.1
Erfk/ybis/ycfs/ynhg family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.498
KHD76755.1
Major vault protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
KHD74383.1
GPI mannosyltransferase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
KHD74393.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.462
KHD73452.1
Cell division protein DivIVA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
KHD72576.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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