STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD79044.1DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)    
Predicted Functional Partners:
KHD78838.1
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.911
KHD78839.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.841
KHD78837.1
RNA polymerase sigma factor SigC; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
       0.644
trpA-2
Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
    
 0.538
KHD72414.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.521
KHD78755.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.503
KHD78836.1
Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.489
KHD77950.1
Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.467
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.