STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD78511.11,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)    
Predicted Functional Partners:
KHD75811.1
alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.958
KHD75678.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.894
KHD75635.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.858
KHD78512.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.788
KHD76806.1
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.735
KHD78776.1
Xyloglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
KHD75655.1
Arabinan endo-1 5-alpha-L-arabinosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
  
 0.696
KHD78965.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.681
KHD75631.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.666
KHD76092.1
Arabinan endo-1,5-alpha-L-arabinosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.665
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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