STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD78188.1Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)    
Predicted Functional Partners:
KHD78189.1
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
       0.642
KHD79118.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.546
KHD76137.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.539
KHD78579.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.509
KHD76202.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.509
KHD72041.1
Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.
   
 0.509
KHD78187.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.468
KHD78250.1
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.457
KHD78025.1
Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.430
KHD72233.1
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.429
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.