STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD77083.1Glutathionylspermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)    
Predicted Functional Partners:
KHD77082.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
    
   0.685
KHD77081.1
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.620
KHD76568.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.534
KHD77078.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.494
KHD77079.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.494
KHD77080.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.494
KHD78012.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.453
KHD73840.1
Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.453
KHD76161.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.447
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.