STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD76789.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (759 aa)    
Predicted Functional Partners:
rsmG
16S rRNA methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.901
KHD76126.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.680
KHD75872.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.680
KHD76790.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.658
rnpA
Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
  
 0.654
KHD74179.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.639
KHD78235.1
GTP pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.632
KHD76853.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.577
KHD76675.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.555
KHD76095.1
liaG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.