Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHD76860.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)    
Predicted Functional Partners:
KHD76822.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
KHD72193.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.979
KHD73263.1
Macrolide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.977
KHD78037.1
Macrolide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.976
KHD72182.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.935
KHD75172.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.898
KHD74923.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.882
KHD72245.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.874
KHD76989.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.822
KHD72105.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.817
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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