Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KHD75559.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)    
Predicted Functional Partners:
KHD73018.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.651
KHD78933.1
acyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.584
KHD78422.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.564
KHD75274.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.564
KHD79018.1
Acetaldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.563
KHD75560.1
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.553
KHD76403.1
CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.487
KHD73008.1
3-oxoadipate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.487
KHD75558.1
Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.460
KHD78755.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.425
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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