STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD75476.1Dak phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (677 aa)    
Predicted Functional Partners:
KHD76062.1
DegV domain-containing protein SCO2569; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
KHD75477.1
ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.948
rpmB-2
50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.664
KHD79045.1
Alkaline-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.608
KHD76649.1
Alkaline-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.608
KHD79146.1
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HAD-like hydrolase superfamily.
      
 0.573
glyS
glycyl-tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.541
KHD74959.1
DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.525
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
     0.453
KHD75479.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.440
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.