Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KHD74995.1Carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)    
Predicted Functional Partners:
KHD72983.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.958
KHD74994.1
Trypsin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.713
KHD72314.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.663
KHD74996.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.572
KHD76249.1
Peptidase S1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
KHD77696.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the protease inhibitor I16 (SSI) family.
  
 
  0.526
KHD76926.1
Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.524
KHD77296.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.507
KHD76641.1
Peptidase S1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
KHD73519.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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