Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
KHD74717.1Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)    
Predicted Functional Partners:
KHD77949.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.957
KHD74163.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.955
KHD73445.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.928
KHD75116.1
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alkaline phosphatase family.
 
 0.880
KHD72921.1
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.784
KHD75032.1
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.719
KHD74011.1
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.705
KHD72813.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.617
KHD75599.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.550
KHD75861.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.529
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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