Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHD74385.1PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)    
Predicted Functional Partners:
KHD74401.1
Inositol-3-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.912
KHD79057.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
KHD74384.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
KHD76102.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.542
KHD74386.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.471
KHD72669.1
Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
KHD72491.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.429
KHD73737.1
Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.424
KHD75425.1
Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
whiB-6
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.403
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
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