STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHD74208.1GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)    
Predicted Functional Partners:
KHD72361.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.728
KHD78520.1
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.656
KHD76995.1
alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.615
KHD75510.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.598
KHD78820.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.581
KHD73496.1
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.581
KHD78596.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.568
KHD78309.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.566
KHD79006.1
Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family.
  
  
  0.523
KHD79223.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
Your Current Organism:
Actinoplanes utahensis
NCBI taxonomy Id: 1869
Other names: A. utahensis, ATCC 14539, DSM 43147, IFO 13244, IMSNU 20044, JCM 3122, NBRC 13244, NRRL B-16727, VKM Ac-674
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.