STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900120415_00149Unannotated protein. (511 aa)    
Predicted Functional Partners:
GCA_900120415_00148
Unannotated protein.
 0.999
GCA_900120415_01433
Unannotated protein.
   
 
 0.937
GCA_900120415_00147
Unannotated protein.
  
 0.928
GCA_900120415_01364
Unannotated protein.
    
 0.906
GCA_900120415_00146
Unannotated protein.
  
 0.864
GCA_900120415_00242
Unannotated protein.
    
 0.830
GCA_900120415_01272
Unannotated protein.
     
 0.807
GCA_900120415_01271
Unannotated protein.
     
 0.804
GCA_900120415_01642
Unannotated protein.
     
 0.804
GCA_900120415_01635
Unannotated protein.
     
 0.797
Your Current Organism:
Urmitella timonensis
NCBI taxonomy Id: 1870994
Other names: CSUR P2918, Tissierella sp. Marseille-P2918, U. timonensis, strain Marseille-P2918
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.