STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900119895_00275Unannotated protein. (320 aa)    
Predicted Functional Partners:
GCA_900119895_00759
Unannotated protein.
    
 0.937
GCA_900119895_00039
Unannotated protein.
 
 
 0.923
GCA_900119895_01137
Unannotated protein.
  
  
 
0.906
GCA_900119895_01153
Unannotated protein.
    
 0.905
GCA_900119895_00310
Unannotated protein.
 
  
 0.893
GCA_900119895_01207
Unannotated protein.
  
 
 0.885
GCA_900119895_00350
Unannotated protein.
  
 
 0.877
GCA_900119895_01376
Unannotated protein.
    
 0.874
GCA_900119895_00847
Unannotated protein.
 
 
 0.854
GCA_900119895_01131
Unannotated protein.
    
 0.854
Your Current Organism:
Collinsella phocaeensis
NCBI taxonomy Id: 1871016
Other names: C. phocaeensis, CSUR P3245, Collinsella sp. Marseille-P3245, strain Marseille-P3245
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.