STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900119895_01361Unannotated protein. (285 aa)    
Predicted Functional Partners:
GCA_900119895_01709
Unannotated protein.
  
 
 0.824
GCA_900119895_01096
Unannotated protein.
    
 0.821
GCA_900119895_01502
Unannotated protein.
  
 
 0.748
GCA_900119895_01257
Unannotated protein.
  
 0.746
GCA_900119895_01362
Unannotated protein.
       0.710
GCA_900119895_01739
Unannotated protein.
 
  
 0.709
GCA_900119895_01738
Unannotated protein.
   
   0.691
GCA_900119895_00684
Unannotated protein.
     
 0.670
GCA_900119895_01095
Unannotated protein.
    
 0.663
GCA_900119895_00264
Unannotated protein.
    
 
 0.658
Your Current Organism:
Collinsella phocaeensis
NCBI taxonomy Id: 1871016
Other names: C. phocaeensis, CSUR P3245, Collinsella sp. Marseille-P3245, strain Marseille-P3245
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.