STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900120345_00448Unannotated protein. (386 aa)    
Predicted Functional Partners:
GCA_900120345_00447
Unannotated protein.
 
  0.968
GCA_900120345_01941
Unannotated protein.
  
  0.868
GCA_900120345_02042
Unannotated protein.
  
  0.868
GCA_900120345_01680
Unannotated protein.
  
  0.857
GCA_900120345_02200
Unannotated protein.
  
  0.857
GCA_900120345_01732
Unannotated protein.
  
  0.855
GCA_900120345_02209
Unannotated protein.
  
  0.855
GCA_900120345_01412
Unannotated protein.
  
  0.853
GCA_900120345_02488
Unannotated protein.
  
  0.852
GCA_900120345_00427
Unannotated protein.
  
  0.851
Your Current Organism:
Lachnoclostridium phocaeense
NCBI taxonomy Id: 1871021
Other names: CSUR P3177, Eubacterium sp. Marseille-P3177, L. phocaeense, strain Marseille-P3177
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.