STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0015Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: pae:PA5124 two-component sensor NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (350 aa)    
Predicted Functional Partners:
Mlg_0016
Nitrogen metabolism transcriptional regulator, NtrC, Fis family; KEGG: pae:PA5125 two-component response regulator NtrC; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 0.997
Mlg_2550
PFAM: nitrogen regulatory protein P-II; KEGG: pmu:PM2004 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 0.976
Mlg_1118
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; PAS fold-4 domain protein; KEGG: gme:Gmet_0780 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor.
    
 0.798
Mlg_0013
KEGG: mca:MCA1677 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp.
  
  
 0.773
Mlg_0080
PFAM: nitrogen regulatory protein P-II; KEGG: hch:HCH_06398 nitrogen regulatory protein PII.
  
 
 0.772
Mlg_0079
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: tcx:Tcr_1500 ammonium transporter.
  
 
 0.756
Mlg_2763
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: hch:HCH_05965 glutamate synthase domain 2.
     
 0.710
Mlg_0669
PFAM: response regulator receiver; KEGG: pol:Bpro_4150 response regulator receiver domain protein (CheY-like).
 
 
 
 0.696
Mlg_2153
PFAM: response regulator receiver; KEGG: bba:Bd3035 nitrogen assimilation regulatory protein NtrX.
 
 
 0.610
Mlg_0014
KEGG: csa:Csal_0244 hypothetical protein.
       0.609
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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