STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0030PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: pfl:PFL_5656 tRNA nucleotidyltransferase. (413 aa)    
Predicted Functional Partners:
Mlg_1729
Archease family protein; PFAM: protein of unknown function DUF101; KEGG: tbd:Tbd_2360 putative tRNA nucleotidyltransferase/poly(A) polymerase.
 
      0.849
Mlg_0029
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: noc:Noc_0390 NAD-dependent epimerase/dehydratase.
  
    0.825
Mlg_0440
TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; KEGG: xcb:XC_4026 biotin acetyl-CoA-carboxylase synthetase.
  
  
 0.803
Mlg_1898
PFAM: dihydrodipicolinate reductase; KEGG: pst:PSPTO4503 dihydrodipicolinate reductase.
  
    0.713
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.688
Mlg_2207
PFAM: Stringent starvation protein B; KEGG: hch:HCH_10003 stringent starvation protein B.
  
     0.661
Mlg_0028
PFAM: protein of unknown function DUF81; KEGG: pae:PA0340 hypothetical protein.
       0.565
Mlg_1838
Cell division protein FtsB; PFAM: Septum formation initiator; KEGG: noc:Noc_0853 septum formation initiator.
 
     0.532
Mlg_2763
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: hch:HCH_05965 glutamate synthase domain 2.
      
 0.523
Mlg_2189
PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: psp:PSPPH_4105 cell division protein FtsQ, putative.
 
     0.506
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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