STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0299KEGG: dar:Daro_1464 probable transmembrane protein. (208 aa)    
Predicted Functional Partners:
Mlg_0298
KEGG: pae:PA0110 hypothetical protein.
 
  
 0.985
Mlg_0300
PFAM: cytochrome oxidase assembly; KEGG: noc:Noc_3040 cytochrome oxidase assembly.
 
 
 0.976
Mlg_0301
TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: mca:MCA0062 protoheme IX farnesyl transferase.
 
  
 0.916
Mlg_0293
PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; KEGG: mca:MCA0879 cytochrome c oxidase, subunit II.
 
 
 0.891
Mlg_0295
PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: noc:Noc_3045 cytochrome c oxidase assembly protein CtaG/Cox11.
 
 
 0.871
Mlg_0296
PFAM: cytochrome c oxidase, subunit III; KEGG: xcb:XC_3901 cytochrome c oxidase subunit III.
 
  
 0.702
Mlg_0294
PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2871 cytochrome c oxidase, subunit I.
 
  
 0.656
Mlg_0523
PFAM: cytochrome c, class I; KEGG: noc:Noc_3050 cytochrome c, class I.
 
     0.621
Mlg_0297
KEGG: xoo:XOO4136 hypothetical protein.
       0.600
Mlg_0554
KEGG: pfo:Pfl_3109 hypothetical protein.
 
    0.575
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.