STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0560PFAM: permease YjgP/YjgQ family protein; KEGG: noc:Noc_1909 permease YjgP/YjgQ. (360 aa)    
Predicted Functional Partners:
Mlg_0559
PFAM: permease YjgP/YjgQ family protein; KEGG: hch:HCH_01933 predicted permease.
 
 0.999
Mlg_2229
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP0953 ABC transporter, ATP-binding protein, putative.
 
 
 0.991
Mlg_2227
PFAM: protein of unknown function DUF1239; KEGG: noc:Noc_2790 protein of unknown function DUF1239.
 
 
 0.912
Mlg_0558
PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: nmu:Nmul_A0746 leucyl aminopeptidase; Metallo peptidase; MEROPS family M17.
 
     0.689
Mlg_0557
PFAM: DNA polymerase III chi subunit, HolC; KEGG: noc:Noc_0288 DNA polymerase III chi subunit, HolC.
       0.641
Mlg_0199
PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: noc:Noc_1724 organic solvent tolerance protein.
 
  
 0.630
Mlg_2228
PFAM: OstA family protein; KEGG: tbd:Tbd_0535 OstA-like family protein.
 
   
 0.572
Mlg_1851
KEGG: pfo:Pfl_1114 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19.
 
     0.552
Mlg_0245
Cell division and transport-associated protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: mca:MCA1226 TolQ protein; TC 2.C.1.2.1.
  
     0.519
Mlg_2207
PFAM: Stringent starvation protein B; KEGG: hch:HCH_10003 stringent starvation protein B.
  
    0.512
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.