STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0706Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: noc:Noc_2362 sigma-54 specific, transcriptional regulator, fis family. (560 aa)    
Predicted Functional Partners:
Mlg_2230
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: pae:PA4462 RNA polymerase sigma-54 factor.
 
   
 0.780
Mlg_0704
PFAM: flagellar protein FliS; KEGG: noc:Noc_2364 flagellar protein FliS.
  
  
 0.749
Mlg_0708
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: noc:Noc_2360 flagellar hook-basal body complex protein FliE.
 
  
 0.736
Mlg_1118
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; PAS fold-4 domain protein; KEGG: gme:Gmet_0780 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor.
  
 
 0.710
Mlg_0710
PFAM: flagellar motor switch protein FliG; KEGG: xcb:XC_2261 flagellar protein.
  
  
 0.699
Mlg_0711
PFAM: flagellar assembly protein FliH; KEGG: noc:Noc_2357 flagellar assembly protein FliH.
 
  
 0.697
Mlg_0709
TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: noc:Noc_2359 flagellar FliF M-ring protein.
  
  
 0.679
Mlg_0359
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: noc:Noc_0126 CheA signal transduction histidine kinase.
  
 
 0.627
Mlg_0707
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05196 sigma 54-dependent transcriptional activator containing CheY-like receiver domain.
 
    
0.620
Mlg_0712
Flagellar protein export ATPase FliI; KEGG: noc:Noc_2356 flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase.
  
  
 0.618
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.