STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_1071PFAM: cytochrome c, class I; KEGG: noc:Noc_3049 cytochrome c, class I. (105 aa)    
Predicted Functional Partners:
Mlg_2209
PFAM: cytochrome c1; KEGG: nmu:Nmul_A1003 cytochrome c1.
 
  
 0.770
Mlg_2211
KEGG: noc:Noc_0299 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein.
 
   
 0.724
Mlg_0561
PFAM: RDD domain containing protein; KEGG: tbd:Tbd_1995 putative transmembrane protein.
  
     0.660
Mlg_2210
PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: pae:PA4430 ubiquinol-cytochrome c reductase cytochrome b subunit.
 
  
 0.605
Mlg_1072
KEGG: hch:HCH_01015 cytochrome c553.
 
    
0.557
Mlg_0083
KEGG: bbr:BB4582 putative cytochrome c.
 
   
 0.543
Mlg_1073
PFAM: FMN-binding domain protein; KEGG: hch:HCH_03389 regulator of nitric oxide reductase transcription.
  
  
 0.474
Mlg_1070
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: bmb:BruAb2_0899 NnrR, transcriptional regulator.
       0.472
Mlg_1266
PFAM: cytochrome c, class I; KEGG: reu:Reut_A3262 cytochrome c, class I.
  
     0.423
Mlg_1267
Sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mag:amb2173 uncharacterized NAD(FAD)-dependent dehydrogenase.
 
 
 
 0.422
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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