STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_1172TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; KEGG: cvi:CV1640 regulator of ribonuclease activity A. (161 aa)    
Predicted Functional Partners:
Mlg_1173
Heat shock protein Hsp15; PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_2006 RNA-binding S4.
       0.716
Mlg_1174
Hypothetical protein.
       0.637
Mlg_2515
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3759 similar to ABC transporter (binding protein).
     
 0.560
Mlg_1167
PFAM: Cupin 2, conserved barrel domain protein; KEGG: rru:Rru_A2000 hypothetical protein.
       0.540
Mlg_1170
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xac:XAC1488 sensor histidine kinase.
       0.537
Mlg_1166
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: vpa:VP2536 putative hemolysin.
       0.535
Mlg_1168
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: rru:Rru_A1998 ribulose-bisphosphate carboxylase-like protein; rubisco-like protein.
       0.535
Mlg_1169
PFAM: protein of unknown function DUF6, transmembrane; KEGG: pae:PA2628 hypothetical protein.
       0.535
Mlg_1171
Hypothetical protein.
       0.535
Mlg_2412
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.416
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.