STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_1290KEGG: nha:Nham_3120 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Mlg_1289
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: csa:Csal_1917 formate dehydrogenase, gamma subunit.
 
     0.887
Mlg_1287
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3260 4Fe-4S ferredoxin, iron-sulfur binding.
 
     0.875
Mlg_1286
Formate dehydrogenase alpha subunit; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: vpa:VP1513 putative formate dehydrogenase large subunit.
 
     0.861
Mlg_1283
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein.
 
     0.854
Mlg_1284
PFAM: cytoplasmic chaperone TorD family protein; KEGG: nha:Nham_3124 cytoplasmic chaperone TorD.
 
     0.848
Mlg_2425
TIGRFAM: formate dehydrogenase, gamma subunit; PFAM: cytochrome B561; KEGG: csa:Csal_1917 formate dehydrogenase, gamma subunit.
 
     0.783
Mlg_1279
KEGG: sme:SMa1515 hypothetical protein.
 
     0.775
Mlg_2745
TIGRFAM: DNA binding domain, excisionase family; KEGG: mag:amb2274 periplasmic molybdate-binding protein/domain.
  
     0.678
Mlg_2739
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb3045 ABC-type polar amino acid transport system, ATPase component; TC 3.A.1.3.-.
  
     0.660
Mlg_1282
KEGG: rso:RSc2377 proline rich protein.
 
     0.619
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.