Mlg_1474 protein (Alkalilimnicola ehrlichii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Mlg_1474

KEGG: csa:Csal_2568 transcriptional regulator-like protein. (331 aa)

Predicted Functional Partners:

rpoB

0.520

Mlg_0452

0.520

rpoA

0.520

Mlg_2443

0.520

Mlg_1475

0.430

Your Current Organism:

Alkalilimnicola ehrlichii

NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mlg_0452	Mlg_1474	Mlg_0452	Mlg_1474	KEGG: noc:Noc_2330 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein.	KEGG: csa:Csal_2568 transcriptional regulator-like protein.	0.520
Mlg_0452	Mlg_2443	Mlg_0452	Mlg_2443	KEGG: noc:Noc_2330 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein.	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: aci:ACIAD3325 RNA polymerase, omega subunit.	0.975
Mlg_0452	rpoA	Mlg_0452	Mlg_0483	KEGG: noc:Noc_2330 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
Mlg_0452	rpoB	Mlg_0452	Mlg_0451	KEGG: noc:Noc_2330 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
Mlg_1474	Mlg_0452	Mlg_1474	Mlg_0452	KEGG: csa:Csal_2568 transcriptional regulator-like protein.	KEGG: noc:Noc_2330 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein.	0.520
Mlg_1474	Mlg_1475	Mlg_1474	Mlg_1475	KEGG: csa:Csal_2568 transcriptional regulator-like protein.	KEGG: csa:Csal_1457 hypothetical protein.	0.430
Mlg_1474	Mlg_2443	Mlg_1474	Mlg_2443	KEGG: csa:Csal_2568 transcriptional regulator-like protein.	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: aci:ACIAD3325 RNA polymerase, omega subunit.	0.520
Mlg_1474	rpoA	Mlg_1474	Mlg_0483	KEGG: csa:Csal_2568 transcriptional regulator-like protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.520
Mlg_1474	rpoB	Mlg_1474	Mlg_0451	KEGG: csa:Csal_2568 transcriptional regulator-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.520
Mlg_1475	Mlg_1474	Mlg_1475	Mlg_1474	KEGG: csa:Csal_1457 hypothetical protein.	KEGG: csa:Csal_2568 transcriptional regulator-like protein.	0.430
Mlg_2443	Mlg_0452	Mlg_2443	Mlg_0452	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: aci:ACIAD3325 RNA polymerase, omega subunit.	KEGG: noc:Noc_2330 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein.	0.975
Mlg_2443	Mlg_1474	Mlg_2443	Mlg_1474	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: aci:ACIAD3325 RNA polymerase, omega subunit.	KEGG: csa:Csal_2568 transcriptional regulator-like protein.	0.520
Mlg_2443	rpoA	Mlg_2443	Mlg_0483	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: aci:ACIAD3325 RNA polymerase, omega subunit.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
Mlg_2443	rpoB	Mlg_2443	Mlg_0451	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: aci:ACIAD3325 RNA polymerase, omega subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.989
rpoA	Mlg_0452	Mlg_0483	Mlg_0452	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	KEGG: noc:Noc_2330 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein.	0.997
rpoA	Mlg_1474	Mlg_0483	Mlg_1474	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	KEGG: csa:Csal_2568 transcriptional regulator-like protein.	0.520
rpoA	Mlg_2443	Mlg_0483	Mlg_2443	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: aci:ACIAD3325 RNA polymerase, omega subunit.	0.995
rpoA	rpoB	Mlg_0483	Mlg_0451	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
rpoB	Mlg_0452	Mlg_0451	Mlg_0452	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	KEGG: noc:Noc_2330 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein.	0.999
rpoB	Mlg_1474	Mlg_0451	Mlg_1474	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	KEGG: csa:Csal_2568 transcriptional regulator-like protein.	0.520

page 1 of 2

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About